VIRsiRNAdb

../../tmp/servers/virsirnadb/781880271
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1726	1	`aggtatttgaatttgcat`	18
NC_001357.1	Human papillomavirus - 18, complete genome	232	`..................`	249	100
NC_001357.1	Human papillomavirus - 18, complete genome	2687	`__............c.._`	2701	77
NC_001583.1	Human papillomavirus type 26, complete genome	2365	`_.c...........a...`	2349	83
NC_001583.1	Human papillomavirus type 26, complete genome	3092	`_.........t.g.____`	3104	61
NC_012213.1	Human papillomavirus type 108, complete genome	1697	`___.............__`	1709	72
NC_012213.1	Human papillomavirus type 108, complete genome	6709	`...a........._____`	6721	66
NC_001693.1	Human papillomavirus type 60, complete genome	6037	`.....a.aa.........`	6020	83
NC_001693.1	Human papillomavirus type 60, complete genome	4700	`____...........a._`	4712	66
NC_008032.1	Capra hircus papillomavirus type 1, complete genome	6114	`____............t.`	6101	72
NC_008032.1	Capra hircus papillomavirus type 1, complete genome	1673	`_.........._______`	1682	55
NC_008184.1	Tursiops truncatus papillomavirus 2, complete genome	7560	`____...........a..`	7573	72
NC_008184.1	Tursiops truncatus papillomavirus 2, complete genome	3886	`___.t...c.........`	3900	72
NC_008184.1	Tursiops truncatus papillomavirus 2, complete genome	7564	`__.a..........a.._`	7578	72
NC_008189.1	Human papillomavirus type 101, complete genome	1304	`_____............_`	1315	66
NC_008189.1	Human papillomavirus type 101, complete genome	4312	`____...........a._`	4324	66
NC_008189.1	Human papillomavirus type 101, complete genome	3808	`.........tg...____`	3795	66
NC_008189.1	Human papillomavirus type 101, complete genome	1443	`___.........._____`	1434	55
NC_013035.1	Human papillomavirus 116, complete genome	2322	`_____............_`	2333	66
NC_013035.1	Human papillomavirus 116, complete genome	4484	`____.........c.a._`	4496	61
NC_001694.1	Human papillomavirus - 61, complete genome	1448	`....cc.........t._`	1432	77
NC_001531.1	Human papillomavirus - 5, complete genome	2582	`.a.g..........c.._`	2598	77
NC_014954.1	Human papillomavirus type 131, complete genome	5030	`_..........gc..t..`	5014	77
NC_014954.1	Human papillomavirus type 131, complete genome	1103	`____..........____`	1094	55
NC_012486.1	Human papillomavirus type 112, complete genome	309	`___.t...t.........`	323	72
NC_012486.1	Human papillomavirus type 112, complete genome	4766	`___.........a..___`	4777	61
NC_001595.1	Human papillomavirus type 7, complete genome	2617	`__..g.........c.._`	2631	72
NC_001595.1	Human papillomavirus type 7, complete genome	2698	`...ag..cc.........`	2681	77
NC_001595.1	Human papillomavirus type 7, complete genome	136	`___.........._____`	145	55
NC_007612.1	Bovine papillomavirus 7, complete genome	4672	`...a.........a.___`	4686	72
NC_007612.1	Bovine papillomavirus 7, complete genome	4829	`____...........a._`	4841	66
NC_010107.1	Bandicoot papillomatosis carcinomatosis virus type 1, complete genome	3584	`..........t.._____`	3572	66
NC_010107.1	Bandicoot papillomatosis carcinomatosis virus type 1, complete genome	6138	`_.c..aa.........._`	6123	72
NC_010329.1	Human papillomavirus type 88, complete genome	4612	`____...........a._`	4624	66
NC_010329.1	Human papillomavirus type 88, complete genome	4653	`______..........__`	4662	55
NC_014835.1	Human papillomavirus type 148, complete genome	1606	`___...........t.__`	1594	66
NC_014835.1	Human papillomavirus type 148, complete genome	4949	`____...........a._`	4961	66
NC_001354.1	Human papillomavirus type 41, complete genome	2584	`..a.........._____`	2572	66
NC_005134.2	Human papillomavirus type 96, complete genome	2682	`___...........____`	2692	61
NC_005134.2	Human papillomavirus type 96, complete genome	6328	`____...........___`	6318	61
NC_012123.1	Equine papillomavirus 2, complete genome	2676	`__..........._____`	2686	61
NC_001591.1	Human papillomavirus type 49, complete genome	2544	`___...........____`	2554	61
NC_015267.1	Camelus dromedarius papillomavirus type 1, complete genome	7014	`_____...........__`	7004	61
NC_015267.1	Camelus dromedarius papillomavirus type 1, complete genome	7556	`___.........ca..._`	7569	66
NC_011280.1	Sus scrofa papillomavirus type 1, complete genome	2055	`_.c.t.........a.._`	2040	72
NC_006564.1	Canine papillomavirus 2, complete genome	5497	`___..g.........a._`	5510	66
NC_001586.1	Human papillomavirus type 32, complete genome	2582	`___.g.........c.._`	2595	66
NC_006563.1	Trichechus manatus latirostris papillomavirus 1, complete genome	2170	`___.t..a........._`	2157	66
NC_003748.1	Equus caballus papillomavirus - 1, complete genome	6354	`__.........c..____`	6365	61
NC_003748.1	Equus caballus papillomavirus - 1, complete genome	7038	`___.g..........___`	7027	61
NC_004194.1	Equinus papillomavirus, complete genome	6333	`__.........c..____`	6344	61
NC_004194.1	Equinus papillomavirus, complete genome	7017	`___.g..........___`	7006	61
NC_008582.1	Old World harvest mouse papillomavirus, complete genome	2392	`_____.........a.._`	2403	61
NC_009752.1	Bovine papillomavirus 8, complete genome	4725	`__.c..........____`	4714	61
NC_004197.1	Bovine papillomavirus 3, complete genome	5724	`___.c..........___`	5713	61
NC_004197.1	Bovine papillomavirus 3, complete genome	2771	`____..ca........._`	2783	61
NC_014956.1	Human papillomavirus type 134, complete genome	2481	`___.........c..___`	2492	61
NC_015268.1	Camelus dromedarius papillomavirus type 2, complete genome	7631	`_____..........a._`	7620	61
NC_002232.1	Rabbit oral papillomavirus, complete genome	548	`..........________`	539	55
NC_010817.1	Bandicoot papillomatosis carcinomatosis virus type 2, complete genome	6111	`_______.........._`	6102	55
NC_001458.1	Human papillomavirus type 63, complete genome	491	`_____..........___`	482	55
NC_004500.1	Human papillomavirus type 92, complete genome	6108	`___..ac.........t.`	6094	66
NC_014469.1	Gammapapillomavirus HPV127, complete genome	1177	`__...aca........._`	1163	66
NC_001691.1	Human papillomavirus type 50, complete genome	573	`_____.g.........t.`	585	61
NC_001526.2	Human papillomavirus type 16, complete genome	1925	`____.........at.._`	1937	61
NC_014185.1	Human papillomavirus 121, complete genome	5575	`_____.........ca..`	5563	61

VIRsiRNAdb

Database of Viral siRNA / shRNA